$ lexicmap -h
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Version: v0.4.0
Documents: https://bioinf.shenwei.me/LexicMap
Source code: https://github.com/shenwei356/LexicMap
Usage:
lexicmap [command]
Available Commands:
autocompletion Generate shell autocompletion scripts
index Generate an index from FASTA/Q sequences
search Search sequences against an index
utils Some utilities
version Print version information and check for update
Flags:
-h, --help help for lexicmap
-X, --infile-list string ► File of input file list (one file per line). If given, they are
appended to files from CLI arguments.
--log string ► Log file.
--quiet ► Do not print any verbose information. But you can write them to a file
with --log.
-j, --threads int ► Number of CPU cores to use. By default, it uses all available cores.
(default 16)
Use "lexicmap [command] --help" for more information about a command.
