utils
$ lexicmap utils
Some utilities
Usage:
lexicmap utils [command]
Available Commands:
2blast Convert the default search output to blast-style format
genomes View genome IDs in the index
kmers View k-mers captured by the masks
masks View masks of the index or generate new masks randomly
reindex-seeds Recreate indexes of k-mer-value (seeds) data
remerge Rerun the merging step for an unfinished index
seed-pos Extract and plot seed positions via reference name(s)
subseq Extract subsequence via reference name, sequence ID, position and strand
Flags:
-h, --help help for utils
Global Flags:
-X, --infile-list string ► File of input file list (one file per line). If given, they are
appended to files from CLI arguments.
--log string ► Log file.
--quiet ► Do not print any verbose information. But you can write them to a file
with --log.
-j, --threads int ► Number of CPU cores to use. By default, it uses all available cores.
(default 16)
Subcommands: